Characterization of protonated AcAlaDab and AcDabAla by IRMPD spectroscopy and molecular modeling

Alanine (Ala) based oligopeptides containing a residue of 2,4-diaminobutyric acid (Dab) serve as a unique model to examine the effect of the side-chain ionization on the conformational changes of the peptide backbone structure. In this work, two isomeric dipeptide ions, AcAlaDabH+ and AcDabAlaH+, are studied by infrared multiple photon dissociation (IRMPD) spectroscopy and quantum chemical modeling. The IRMPD spectra were recorded in a Fourier transform-ion cyclotron resonance mass spectrometer coupled to an infrared free electron laser. For each peptide ion, seven theoretical infrared (IR) spectra were obtained from a set of unique low-energy conformations calculated at the ωB97X-D/6-311 + G(d,p) level of theory. A manually weighted IR spectrum containing two conformations gives the best prediction for each IRMPD spectrum. An interesting spectral feature is that the frequency of the amide I band of AcAlaDabH+ is about 30 cm−1 lower compared to that of AcDabAlaH+. This redshift of the amide I band implies a stronger hydrogen-bonding interaction between the charged NH3+ group on the side-chain of Dab and the Cdouble bondO group of the backbone in the former ion. The stronger hydrogen-bonding interaction is likely due to a combination of a shorter H⋯O distance and a more favorable alignment of the N–H–O moiety in a unique conformation adopted by AcAlaDabH+, which results in an increased stability of the ion. The results explain an earlier observation that AcAlaDab has a higher proton affinity than AcDabAla.

Recommended citation: Patrick Batoon, Yuntao Zhang, Giel Berden, Jos Oomens, Jianhua Ren. (2019). "Characterization of protonated AcAlaDab and AcDabAla by IRMPD spectroscopy and molecular modeling." International Journal of Mass Spectrometry, 444, 116178. https://doi.org/10.1016/j.ijms.2019.116178
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